Where is the divergence? v1

Okay, here's where I had reached last week:

This is a map of FST (y-axis) against map position... of course, what it reflects is mostly just low-divergence (low phylogenetic informativeness) loci (near zero) vs loci that do a good job of distinuishing the reds and the whites. A fixation index is probably not what I want for this project. It does, however, show us what loci are strongly divergent. I wonder what this would look like if we mapped (1) the red-white break, (2) a major within-white break, and (3) a major within-red break on the same plot?

Okay: let me bin these individuals into clades.